Scope The scope of this half-day event is to feature a diverse array of speakers from the biomedical field aiming to inspire participants about their career possibilities outside academia. The target audience are PhD students, postdocs, and everyone who is interested to listen to speakers who have transitioned from academia to a different career path. Registration The registration deadline is May

https://www.stemcellcenter.lu.se/research-school/program-overview/symposia/beyond-academia - 2025-04-27

Scope The scope of this symposium is to provide a forum to discuss the development and applications of single cell approaches in cell biology. What are the underlying biological and technical reasons for conducting such experiments? In what way does data from such approaches, as opposed to more traditional studies on pools of cells, change our understanding of cellular systems and individual cell

https://www.stemcellcenter.lu.se/research-school/program-overview/symposia/single-cell-technologies - 2025-04-27

Welcome to the Preparatory Program Alumni Symposium Since 2017 marks the 10th anniversary of the Preparatory Program in Stem Cell Biology, the Research School will organize an Alumni symposium open to all former Preparatory Program students and all current Stem Cell Center members. We are excited to hear three former Preparatory Program students, Laura Tarnawski, Roger Rönn, and Malin Åkerblom, pr

https://www.stemcellcenter.lu.se/research-school/program-overview/symposia/alumni-symposium - 2025-04-27

Minisymposium on translational research Date and time October 10, 2016 at 13:00 - 16:15 Venue Segerfalk Lecture Hall, BMC A10 Program 13:00 - 13:45  From bench to bedside - cell therapy for Parksinon’s disease Gesine Paul-Visse, Division of Neurology, Lund University 13:50 - 14:35 IL1RAP as a therapeutic target on leukemia stem cells - from discovery towards clinical trials Marcus Järås, Division

https://www.stemcellcenter.lu.se/research-school/program-overview/symposia/bench-to-bedside - 2025-04-27

Explore our wide range of courses and workshops designed to equip the next generation of stem cell scientists with the essential knowledge and skills needed for a successful career. iPS Course: Handling, Maintenance and Understanding of Human Pluripotent Stem CellsThe iPS Course is a new 4-day course that aims to provide a better theoretical and practical understanding of pluripotent stem cells, t

https://www.stemcellcenter.lu.se/education/research-school-stem-cell-biology/program-overview/courses-and-workshops - 2025-04-27

ScopeThe Research School in Stem Cell Biology and the StemTherapy Bioinformatics Core Facility have developed a new bioinformatics initiative in an effort to further improve the bioinformatics expertise of students and postdocs within the Stem Cell Center (SCC).The purpose of this new initiative is two-fold: It will provide all SCC employees with clear instructions what resources for analysis, dat

https://www.stemcellcenter.lu.se/current-topics-bioinformatics - 2025-04-27

AimIn this workshop we will explore novel computational approaches to processing mass-spec proteomics data with a focus on data-independent analysis.Topics include:Broad overview of mass-spec proteomics approachesIntroduction to data-independent proteomics approachesBuilding a spectral library from data-dependent analysis dataSearching data-independent analysis data with the spectral library using

https://www.stemcellcenter.lu.se/computational-proteomics - 2025-04-27

The aim of this 3-day theoretical course is to give participants a working knowledge of flow cytometry covering the following aspects: Basic concepts of flow cytometryInstrumentation - basic principles of operationTechniques - cell handling, staining, designing of protocolData acquisition and analysisApplications of flow cytometryLearning OutcomesOn completion of the course, the participants shall

https://www.stemcellcenter.lu.se/education/research-school-stem-cell-biology/program-overview/courses-and-workshops/flow-cytometry-introductory-course - 2025-04-27

Aim​The aim of this workshop is to provide participants with the necessary skills to understand how to visualize and interpret complex genomic datasets. The workshop will introduce to UCSC Genome Browser, Integrative Genomics Viewer (IGV) and Genomic Visualization in R (GenVisR).Topics includeHigh-throughput genomic datasets and file formats (FASTA, GTF, BED, VCF, MAF, BAM,…)UCSC Genome Browser:-

https://www.stemcellcenter.lu.se/genomic-data-visualization - 2025-04-27

AimThis workshop aims to provide understanding into ChIP- and ATAC-sequencing. Briefly, the workshop recapitulates the bench workflows, how to prepare your data, call peaks, annotation of peaks in the genome, motif analysis and differential peak analysis. Differences between ChIP-and ATAC-sequencing will be highlighted.Topics includeQuick repetition of the workflow/theory of the techniqueDifferenc

https://www.stemcellcenter.lu.se/atac-seq-and-chip-seq - 2025-04-27

The bioinformatics core facility was established in 2013 to assist members of the Stem Cell Center with the their bioinformatics needs, and generally increase biocomputing activity within the SCC. The group is composed of Shamit Soneji (group leader) and Stefan Lang, between them having 30+ years of experience. The team provides assistance with the analysis of various NGS applications as well as s

https://www.stemcellcenter.lu.se/core-facilities-0/lund-stem-cell-center-bioinformatics-facility - 2025-04-27

Aim​The aim of this workshop is to provide participants with the necessary skills to understand and interpret RNA sequencing datasets. Participants will learn how to process, analyze and visualize datasets in a biological meaningful way. After this workshop, participants should be able to assess the quality of their data, analyze it and understand advantages, limitations and challenges while worki

https://www.stemcellcenter.lu.se/bulk-rna-sequencing-data-analysis - 2025-04-27

Aim​The aim of this workshop is to provide participants with the skills to perform basic analysis of scRNA-Seq data in order to identify cellular sub-populations and their marker genes.Topics includeShort overview of the single cell RNA-Seq dataPreprocessing of 10x data (cellranger pipeline)Filtering and normalization of data (Seurat)Dimensionality reduction and visualization using tSNE (Seurat)Pa

https://www.stemcellcenter.lu.se/single-cell-rna-sequencing-data-analysis - 2025-04-27

We routinely provide assistance with the analysis of various NGS applications (RNAseq, ChIPseq, ATACseq to name a few) as well as single-cell RNAseq. We will also analyse data from microarray platforms such as gene expression arrays. In all cases we recommend that you come as see us so we can check your design, but also so that we are aware data will be forth-coming.With advances in technology, ne

https://www.stemcellcenter.lu.se/core-facilities-0/lund-stem-cell-center-bioinformatics-facility/services - 2025-04-27

Aim​This workshop aims to provide participants with the basic practical skills in using Python programming language. It is geared towards everyone who wants to make their daily data analysis more efficient.Day 1: Basic Python and PandasWhy Python?Introduction to interactive Python programming using Jupyter notebook environmentRecap on variables, flow control and functions- Lists and dictionaries-

https://www.stemcellcenter.lu.se/python-programming-foundations - 2025-04-27

AimThis workshop will be more advanced and will demonstrate how R code can be written and stored for future continuous use. It will also introduce elements of Bioconductor packages. We will also include content requested from participants of R programming foundations I.Topics includeIntroduction to S4 classes Writing methods for S4 classesMaking R packages Sending packages to GithubRequested conte

https://www.stemcellcenter.lu.se/r-programming-foundations-ii - 2025-04-27

Please contact the facility manager for quotes on the services offered: Shamit [dot] Soneji [at] med [dot] lu [dot] se (Shamit[dot]Soneji[at]med[dot]lu[dot]se)   

https://www.stemcellcenter.lu.se/core-facilities/lund-stem-cell-center-bioinformatics-facility/charges - 2025-04-27

AimThe purpose of this workshop is to introduce the fundamentals of R programming and Rstudio. By the end of the workshop participants should be able to load data, navigate it, perform simple operations and write small functions.Topics includeFlow controlFunctionsReading and writing tablesStandardising dataBasic plottingPrinciples of clustering data and resampling methods for statistical testingTh

https://www.stemcellcenter.lu.se/r-programming-foundations-i - 2025-04-27

AimThe field of bioinformatics is rooted in UNIX/Linux. The aim of this workshop is to demonstrate basic UNIX commands, and how to use LUNARC to store data and run jobs (such as sequence alignment) using the queuing system.Topics includeNavigating folders and listing filesMaking and deleting foldersCopying/Moving dataFinding filesSearching for expressions in files from the command line, and joinin

https://www.stemcellcenter.lu.se/basic-unixlinux-and-compute-cluster-usage - 2025-04-27

The course aims to provide a broad understanding of different aspects of flow cytometry, including experimental design, sample material handling, analysis of flow cytometry data, as well as file and image handling prior to research publication. The course provides practical knowledge of advanced flow cytometry that can be directly transferred to research questions. Learning Outcomes On completion

https://www.stemcellcenter.lu.se/education/research-school-stem-cell-biology/program-overview/courses-and-workshops/flow-cytometry-continuation-course - 2025-04-27